rs242391821 SNP Detail

Summary

• ID
  rs242391821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53748196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG CGGCGCGGGG CGGCGACGCG
  R
  TGGCGCGGGC CGGTGCGGGG CTCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss917391392	MGP_WTSI_5_53590854	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	G	A	G	A	A	A	A	A	A	G	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs242391821					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A	G	A	A	A	A	A	A	G	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917391392	MGP_WTSI_5_53590854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53748196 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	1768 bp downstream
Tssr46225	transcription start site region 46225	1889 bp downstream
Tssr46226	transcription start site region 46226	1410 bp downstream
Tssr46227	transcription start site region 46227	503 bp downstream
Tssr46228	transcription start site region 46228	477 bp downstream
Tssr46229	transcription start site region 46229	421 bp downstream
Tssr46230	transcription start site region 46230	325 bp downstream
Tssr46231	transcription start site region 46231	186 bp downstream
Tssr46232	transcription start site region 46232	151 bp downstream
Tssr46233	transcription start site region 46233	132 bp downstream
Tssr46234	transcription start site region 46234	205 bp upstream
Tssr46235	transcription start site region 46235	379 bp upstream
Tssr46236	transcription start site region 46236	394 bp upstream
Tssr46237	transcription start site region 46237	546 bp upstream
Tssr46238	transcription start site region 46238	612 bp upstream
Tssr46239	transcription start site region 46239	675 bp upstream
Tssr46240	transcription start site region 46240	742 bp upstream
Tssr46241	transcription start site region 46241	1063 bp upstream
Tssr51023	transcription start site region 51023	1589 bp upstream
Tssr51024	transcription start site region 51024	662 bp upstream
Tssr51025	transcription start site region 51025	265 bp upstream