rs242392004 SNP Detail

Summary

• ID
  rs242392004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107010916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCC AGGTCCCAAA CACCCTACCA
  Y
  GAATACCTCC TTTGGTGCAG GTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863868	CHEV_3_106906518	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242392004					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107010916 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13670	CpG island 13670	730 bp distal
Kcna2	potassium voltage-gated channel, shaker-related subfamily, member 2	within coordinates
Rr77034	regulatory region 77034	within coordinates
Tssr31161	transcription start site region 31161	1951 bp downstream
Tssr31162	transcription start site region 31162	1931 bp downstream
Tssr31163	transcription start site region 31163	1888 bp downstream
Tssr31164	transcription start site region 31164	1797 bp downstream
Tssr31165	transcription start site region 31165	999 bp downstream