rs242395236 SNP Detail

Summary

• ID
  rs242395236
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12767367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGACAGC CAGGGTTACA
  TAGAGAAACC CTGTCTCCCC CCCCCCCCCC AAAAAGAATC TGTCTTTGGC CAGGGATATG
  ACTGAGGTAG GGCCCTGCCC CATATTTACA AAATCCTGGA GTCCCTGGCA GTGAATTAAA
  AAAAGACGTT CATCCAGGTT GTATCTAGAA CCACATACAA ATCCATTCAA GGTGCAGCTT
  S
  TATTCCCTAC CTAAATGTTG CTGGCACAGC CCCAGGAAAT AACCACCTCT GAGCAATTGT
  TCTTGTCCTT ACTCCCATCC TTAACTCTTG CCTATTCATC ACAGCTCACA CTGCAACCTA
  CATTTCTGTG TGTCTGGTCC ACCTCTACTC CTTAGCTCTC TTGGTCTCCC AGTTTGCTAC
  TTGACTTGGC AACATTTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370654937	MGP_WTSI_7_13618789	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242395236					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370654937	MGP_WTSI_7_13618789	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12767367 () rs orientation: forward

Symbol	Name	Function Class
Chmp2a	charged multivesicular body protein 2A	within coordinates
Cpgi18334	CpG island 18334	801 bp proximal
Rr368233	regulatory region 368233	1203 bp upstream
Rr642442	regulatory region 642442	1975 bp distal
Rr642444	regulatory region 642444	1194 bp proximal
Tssr64534	transcription start site region 64534	1424 bp upstream
Tssr70642	transcription start site region 70642	512 bp downstream
Tssr70643	transcription start site region 70643	579 bp downstream
Tssr70644	transcription start site region 70644	683 bp downstream
Tssr70645	transcription start site region 70645	961 bp downstream
Tssr70646	transcription start site region 70646	1164 bp downstream
Tssr70647	transcription start site region 70647	1263 bp downstream
Tssr70648	transcription start site region 70648	1282 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	1680 bp downstream