rs242395297 SNP Detail

Summary

• ID
  rs242395297
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154930645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGGAAC AGTGAAAATC
  AGCTGCTCCT GTCATTTGAG CATAAACCTG AGGTTCTGAG CCACAGATGA GCATTTCTGG
  GTAACTTCAT AAGCTTGCCT CTATATTGCA AGAGGAATTA GGCACAGGGG TTCCAGTTTC
  TACCTAGTGA CCTATAAATA AACACTTGAA CACAATGTGC ACGTCACTTA TACCCAGTCC
  K
  GCTGGGCGGG GGGGGGGGTG GGGGGGTGGG GGGAGGGTCA GTTCCCTTTT TGAATATCAC
  ACTGTCAGGG ATCAACTTTT CTTATAAATT AGTGGCTCCG ATGTTAACCA TGTTCAGTGG
  TGGCCAACTA TGACAGTTTG ATGTTTGTTT TATCCTATAG GGCTTGGGGA CCAACTGAAA
  AAGAACGGAG CAGAGAAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss352009498	MGP_WTSI_1_156902029	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs242395297					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352009498	MGP_WTSI_1_156902029	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154930645 () rs orientation: forward

Symbol	Name	Function Class
Gm29282	predicted gene 29282	within coordinates
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	1625 bp upstream
Gm71001	predicted gene, 71001	within coordinates
Rr372279	regulatory region 372279	210 bp upstream
Tssr247	transcription start site region 247	119 bp upstream
Tssr9520	transcription start site region 9520	73 bp upstream
Tssr14327	transcription start site region 14327	138 bp upstream
Tssr14328	transcription start site region 14328	88 bp upstream
Tssr14329	transcription start site region 14329	35 bp upstream
Tssr14330	transcription start site region 14330	280 bp downstream