rs242398141 SNP Detail

Summary

• ID
  rs242398141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157122020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGTGTATT CAAGTCACTA TTTTATTTGT TGGTAAAGTG
  GCTAAAGTCA GAACTTGCAT TGAAACTTAA GTTTGAGTTT CAGTTATTTG TCTCAGGGCA
  R
  GGGAGTGGGC ACCTACTTAA GAACCTTTTT TCTTTTCTTT ACTTAGATAG GGTCTAGGGA
  GCTGGGAGTT GGTTCAGTGC AACTTGTGGA TCTGAGTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585271	CHEV_2_157105836	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242398141					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157122020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	261 bp distal
Mroh8	maestro heat-like repeat family member 8	551 bp upstream
Rpn2	ribophorin II	within coordinates
Rr397441	regulatory region 397441	1051 bp downstream
Tssr21228	transcription start site region 21228	1075 bp downstream
Tssr21229	transcription start site region 21229	1036 bp downstream
Tssr21230	transcription start site region 21230	970 bp downstream
Tssr21231	transcription start site region 21231	783 bp downstream
Tssr27165	transcription start site region 27165	582 bp upstream
Tssr27166	transcription start site region 27166	545 bp upstream
Tssr27167	transcription start site region 27167	522 bp upstream