rs242398964 SNP Detail

Summary

• ID
  rs242398964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:38718760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGCACGG TGCATGAGGG
  GCAATCCCGG CCTCGCGGGA CCCAGGGAGT TGCAGTCAGT CAGCGCTGGG GGTCCCGAGC
  CGGTCACCTG TTGCCGCCTG CGGGCACGAC CGGCGGACTT CCCGGGCGGC GGCGGTCAGG
  CCCCGGGGTC CCTCCCGCAG CTCGGCCGGC CCAGTCCACA ACGCCCACTC CGGGGTCCCC
  R
  GCCCGCACCC CCGCGGCCGT GCAAGACCCC GGCCGCGCCC TCCCGCCTGC ACCCGACCCC
  AGAAGCCGGC GGCCGCGCGC GGAGGCCCAC GCACTCACTG ATCTCGTACG GCATCCTCGC
  CCACTTGTTA CGGCGCTGCG CTCGAGTGGA ACCTCGCAGT GGCCGAGCCC AGGGACAGCG
  CGGAAGGCGG CGCCGGGCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321518862	CHEV_5_38952656	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242398964					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38718760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15817	CpG island 15817	within coordinates
Gm57313	predicted gene, 57313	395 bp upstream
Gm72219	predicted gene, 72219	1960 bp upstream
Rr399063	regulatory region 399063	261 bp upstream
Tssr46063	transcription start site region 46063	478 bp upstream
Tssr50812	transcription start site region 50812	276 bp upstream
Tssr50813	transcription start site region 50813	246 bp upstream
Tssr50814	transcription start site region 50814	137 bp downstream
Tssr50815	transcription start site region 50815	208 bp downstream
Tssr50816	transcription start site region 50816	241 bp downstream
Tssr50817	transcription start site region 50817	265 bp downstream
Tssr50818	transcription start site region 50818	370 bp downstream
Tssr50819	transcription start site region 50819	1798 bp downstream
Tssr50820	transcription start site region 50820	1827 bp downstream
Wdr1	WD repeat domain 1	within coordinates