rs242399632 SNP Detail

Summary

• ID
  rs242399632
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87002917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTCTCA TTGTTTTTTT
  TGATAGTTCT AAGTTTGAAG GGAATGCAGA TGCCTTTCTT CACTACCTCA GATATTTTAA
  GAATGAAAGG TGAGGCTGGG CTAACATCAT CTTCAGAATA TACTGGTTCC CTGATAATCG
  CTTCCCATGT TATAGTAGCC TTCAATAAAC TCTTGAATTA AAAAAAAAAT AAGATTTTTT
  W
  AAAAAAGATT TGTTTATTTT ATGTATGCGA GTATACTGTC TCTCTTCAGA CACAGCAGAA
  GAGGGCATCG GATCCCATAA CAGAGGGTTG TGAGCCACCA TGTGGTTGCT GGGAATAGAA
  CTCAGGACCT GTGGAAGAAC AACCATTGCC CTTAACTTCT GAGATCTCTT TCCAGCCCCA
  AAGCACAAGA TTTAAGTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772683	CHEV_11_86925593	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242399632					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87002917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3483	CpG island 3483			1889 bp distal
Gm73625	predicted gene, 73625			1831 bp downstream
Mir301	microRNA 301			913 bp upstream
Rr453748	regulatory region 453748			1581 bp distal
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			987 bp upstream