rs242399848 SNP Detail

Summary

• ID
  rs242399848
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26087850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCGCGT CCTTCACGGC
  AGCCGCGCGG AAGGCAACAA GGTCCCCCGC ACGAGCCCGC GAAGTCACTT CTGGGTCGGA
  GTTAGTTGAG GCAGCGTCTG TACTACAGGA CCAAAGCTGC GTCCCCCCCC CCCCCCTGCC
  TGCCCACATT CTGTAGTCTA GCCAACTCCT CGAGAACTCC TTGAATGGAG GCCCTACCAG
  M
  GTAAGGTCTG ATAGTAGCCT TTGTAACCCA AATTGGAGTC ACTGATGACA TCACTTTGAT
  GATTCCGTTC CTCACCCTTT AGTCTCCGAA ACTGCCTAGA GGTCTTGGGT TGGCGAAGGA
  GGTTGTGAGG TCCTGGTGGC AGAGGGGCAG CACTGAGAAA AAAAAAAAAA AAAAAAAAAA
  AAACCTTTCT TCTGCGGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374007166	MGP_WTSI_8_26708306	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242399848					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374007166	MGP_WTSI_8_26708306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26087850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20188	CpG island 20188	20 bp distal
D830025C05Rik	RIKEN cDNA D830025C05 gene	within coordinates
Letm2	leucine zipper-EF-hand containing transmembrane protein 2	252 bp upstream
Rr368506	regulatory region 368506	99 bp downstream
Rr400804	regulatory region 400804	585 bp downstream
Rr661157	regulatory region 661157	812 bp distal
Rr661158	regulatory region 661158	349 bp distal
Rr661159	regulatory region 661159	within coordinates
Rr661160	regulatory region 661160	493 bp proximal
Tssr76686	transcription start site region 76686	707 bp downstream
Tssr76687	transcription start site region 76687	129 bp downstream
Tssr80717	transcription start site region 80717	796 bp upstream
Tssr80718	transcription start site region 80718	317 bp upstream
Tssr80719	transcription start site region 80719	236 bp upstream
Tssr80720	transcription start site region 80720	220 bp upstream