rs242400028 SNP Detail

Summary

• ID
  rs242400028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94900866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGGTCG CTTCCCTGCC
  ATTCGCGCGC AGACTCCCTA GCGCTGAGAC TCCCGCGGTC CGAGAAGTAG CGGCAATTGG
  GATCCCGGGG CCGGCCGCGG GCACCCGCCG CCTCCTCCCC TCGGTCCTAG CTGCTTCCGC
  CCCGCCCGCC CTCCTCTTCC CTCCTTCCCT ACCGTTCTTT GTCTCCCGGG CGCTCGGCCT
  Y
  CCCATAAGCG TATCGCCCCC CCCGCCCCCC CCGTCGCCTT ATCCCGGGCG ACCCCCCACG
  GACCTAGCCA CTGCGACGCT ACACAAATCG GCCGGTGGCG CGAGGGTTCG CGACCCCCGG
  GGTTTGGCGG GGGCGGGGCG GGAGGTGGCG TTCAGGTTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384337419	MGP_WTSI_11_94871354	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242400028					SNP	C	T	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384337419	MGP_WTSI_11_94871354	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94900866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	within coordinates
Gm36385	predicted gene, 36385	within coordinates
Gm51875	predicted gene, 51875	706 bp upstream
Gm72634	predicted gene, 72634	within coordinates
Rr454922	regulatory region 454922	1652 bp distal
Rr454923	regulatory region 454923	697 bp distal
Rr454924	regulatory region 454924	151 bp distal
Rr454925	regulatory region 454925	within coordinates
Rr454926	regulatory region 454926	201 bp proximal
Rr454927	regulatory region 454927	940 bp proximal
Rr454928	regulatory region 454928	1848 bp proximal
Samd14	sterile alpha motif domain containing 14	within coordinates
Tssr104328	transcription start site region 104328	258 bp downstream
Tssr104329	transcription start site region 104329	150 bp downstream
Tssr104330	transcription start site region 104330	121 bp downstream
Tssr104331	transcription start site region 104331	93 bp downstream
Tssr104332	transcription start site region 104332	77 bp downstream
Tssr104333	transcription start site region 104333	11 bp downstream
Tssr104334	transcription start site region 104334	35 bp upstream
Tssr104335	transcription start site region 104335	60 bp upstream
Tssr104336	transcription start site region 104336	136 bp upstream
Tssr104337	transcription start site region 104337	204 bp upstream
Tssr104338	transcription start site region 104338	237 bp upstream
Tssr104339	transcription start site region 104339	257 bp upstream
Tssr104340	transcription start site region 104340	326 bp upstream
Tssr104341	transcription start site region 104341	344 bp upstream
Tssr104342	transcription start site region 104342	432 bp upstream
Tssr110238	transcription start site region 110238	253 bp downstream