rs242402425 SNP Detail

Summary

• ID
  rs242402425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158224716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCATTG TCTTTGTCTG
  TCCAACCGTC TGTCTAATCA GCCTTAGCAA AATAAGCTAT TTTATCTTGT CCTTTCGATT
  AAAAAAAACA ACAAAAGACA GACTTCAAGC CGTTTTGGCA CCCAGAGACC AAACCCCACC
  CAGAGTCTTT GTTTTTATGA TTACTAAAAC TTCATGTCTT AAATTTATAT CTTTGTAAAA
  S
  AGAAAAAAAT TTAAATAGCA ATGTGATCAA ACTTGGATTT TAAAAAAAAT AGGGGCAAAT
  TGGAACCAAG AAGGAATATT TCTTATGGAT AATACGGTGG CCAAGGACTG AAAAACAGAA
  GTGTAGTCGA TAGGAGTTAG ATTACTTGAA AGTTTCCACC TAAGATTTTT TTGGTACAGC
  CTGAGAATAG GTGGGATGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356281262	MGP_WTSI_2_158208532	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242402425					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356281262	MGP_WTSI_2_158208532	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158224716 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Snhg11	small nucleolar RNA host gene 11			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr21317	transcription start site region 21317			1398 bp downstream
Tssr21318	transcription start site region 21318			622 bp downstream
Tssr21319	transcription start site region 21319			208 bp downstream
Tssr21320	transcription start site region 21320			172 bp downstream
Tssr21321	transcription start site region 21321			62 bp downstream
Tssr21322	transcription start site region 21322			49 bp upstream
Tssr21323	transcription start site region 21323			96 bp upstream
Tssr21324	transcription start site region 21324			128 bp upstream
Tssr21325	transcription start site region 21325			168 bp upstream
Tssr21326	transcription start site region 21326			190 bp upstream
Tssr21327	transcription start site region 21327			239 bp upstream
Tssr21328	transcription start site region 21328			277 bp upstream
Tssr21329	transcription start site region 21329			290 bp upstream
Tssr21330	transcription start site region 21330			312 bp upstream
Tssr21331	transcription start site region 21331			885 bp upstream
Tssr21332	transcription start site region 21332			1022 bp upstream
Tssr21333	transcription start site region 21333			1054 bp upstream
Tssr21334	transcription start site region 21334			1821 bp upstream
Tssr27228	transcription start site region 27228			405 bp downstream