rs242402977 SNP Detail

Summary

• ID
  rs242402977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86285325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTGGGG TTGTGGTAGC
  CTTTTTGCCT TTTTTCTGAG GGATGACAAC CTTGAAAGCA AACAAATCAT AAGCATTCCT
  TTATACCCAA TGCTACATTA AGAGACTAAC TTTGAGCACA AGAAAATGGA CATTAGATAG
  GCTTAAAAAA AAAAAAACAA ACAACCAAGA ACTGGAGAGA TGACTCAAAA GTTAAGCACA
  Y
  GTGTTACTCT TGTAACATGT AACATTCACA TGTGGCTTTA ACTCCAGTTC CAGGGGATCC
  AAGTACATTC TAGTATGAGG GTACCAAGCA TGCTTAATGG GTGCGCGCAC ACACAAAGAT
  AAACATTAAA CCCTGAAATA AGGAGACATG GCTTTCAATA CTTTAAAAAA AAAAAAACTG
  GACTCAGCAC CTGAGCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350367738	MGP_WTSI_1_88254178	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242402977					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350367738	MGP_WTSI_1_88254178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86285325 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	1981 bp upstream
Cpgi503	CpG island 503	949 bp proximal
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	253 bp proximal
Ncl	nucleolin	within coordinates
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	1712 bp upstream
Snord82	small nucleolar RNA, C/D box 82	1276 bp upstream
Tssr142	transcription start site region 142	572 bp downstream
Tssr7744	transcription start site region 7744	1176 bp downstream
Tssr7745	transcription start site region 7745	970 bp downstream
Tssr7746	transcription start site region 7746	542 bp downstream
Tssr7747	transcription start site region 7747	490 bp downstream
Tssr7748	transcription start site region 7748	309 bp downstream
Tssr7749	transcription start site region 7749	1950 bp upstream
Tssr12773	transcription start site region 12773	1405 bp upstream
Tssr12774	transcription start site region 12774	1275 bp upstream
Tssr12775	transcription start site region 12775	1139 bp upstream
Tssr12776	transcription start site region 12776	952 bp upstream
Tssr12777	transcription start site region 12777	531 bp upstream
Tssr12778	transcription start site region 12778	454 bp upstream
Tssr12779	transcription start site region 12779	435 bp upstream
Tssr12780	transcription start site region 12780	382 bp upstream
Tssr12781	transcription start site region 12781	334 bp upstream
Tssr12782	transcription start site region 12782	259 bp upstream
Tssr12783	transcription start site region 12783	225 bp upstream
Tssr12784	transcription start site region 12784	198 bp upstream
Tssr12785	transcription start site region 12785	169 bp upstream
Tssr12786	transcription start site region 12786	608 bp downstream
Tssr12787	transcription start site region 12787	873 bp downstream
Tssr12788	transcription start site region 12788	1367 bp downstream
Tssr12789	transcription start site region 12789	1415 bp downstream
Tssr12790	transcription start site region 12790	1755 bp downstream
Tssr12791	transcription start site region 12791	1878 bp downstream