rs242406588 SNP Detail

Summary

• ID
  rs242406588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101676270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGCAGCA GACAGTTGTG
  AGCCCGGGGG AGCAGCTGAT TGGTGCATTT CCTTTGCCTT GGCCTCCGTT CTCGCTCTTC
  CCCCGCCCCT CCCCACCGGT TCCCTTTGTT TCATTGACTT TTGTGAATGA AACCCCAGGG
  CCGGGCACGC CCGCCAATCC TCAGACTCGG CTAGCTGAGC TTGAGGGAGG AGTTTCCCAG
  Y
  CACGAAGACC AATCAGAAAG TAGGGGCTGG CTCCTGGCTT CATTCACTTT TTGGACTTCC
  ATTCATAAAA AAATAAACTC CTTTCGGCTT TAGTTCATTC ATAAAGAATT GAGAAAAAAA
  GACGGAAGCT GAAGACCCGG CAGCTTCTCC ACGGGTTCCA ACCTGGGTTT TGGGTCTAAG
  GACCCCTGAG CTCCTTCCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss384487368	MGP_WTSI_11_101646758	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs242406588					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384487368	MGP_WTSI_11_101646758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101676270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	within coordinates
Etv4	ets variant 4	73 bp upstream
Gm39392	predicted gene, 39392	1645 bp upstream
Gm71843	predicted gene, 71843	305 bp downstream
Rr386582	regulatory region 386582	476 bp upstream
Rr402993	regulatory region 402993	within coordinates
Rr457076	regulatory region 457076	1620 bp distal
Rr457077	regulatory region 457077	466 bp distal
Rr457078	regulatory region 457078	within coordinates
Rr457079	regulatory region 457079	1303 bp proximal
Tssr110962	transcription start site region 110962	1126 bp upstream
Tssr110963	transcription start site region 110963	1094 bp upstream
Tssr110964	transcription start site region 110964	1003 bp upstream
Tssr110965	transcription start site region 110965	963 bp upstream
Tssr110966	transcription start site region 110966	877 bp upstream
Tssr110967	transcription start site region 110967	807 bp upstream
Tssr110968	transcription start site region 110968	769 bp upstream
Tssr110969	transcription start site region 110969	611 bp upstream
Tssr110970	transcription start site region 110970	588 bp upstream
Tssr110971	transcription start site region 110971	262 bp upstream
Tssr110972	transcription start site region 110972	224 bp upstream
Tssr110973	transcription start site region 110973	203 bp upstream
Tssr110974	transcription start site region 110974	155 bp upstream