rs242406797 SNP Detail

Summary

• ID
  rs242406797
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30353259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGATTGAgg attcagccac tcagaggtca
  ctggtgacct gaccaaggaa tcttagaata gtgggAGAAG GAGGTGAACT TTTTGTCATC
  TCTTTCTCAA CCCTCTTTCC CTTGAGGACC CAGAAGGTAA GCCATAGCTC CGAGGTCCCT
  W
  CCCCACTCTA CCTACAATCC TTTGCTTCCC TGTCTGCCTC AGCCTCAGCC CAAAGTCTTG
  CCACCTCTTT TCAAGACCGA CCAGCTTCTA GTGACGTCTC CCTGCCTATC TGCTGCCTAG
  TGATGCTTCA AACATGCACA GGTGACCTTG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325130493	CHEV_16_30534527	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242406797					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30353259 () rs orientation: forward

Symbol	Name	Function Class
Gm60148	predicted gene, 60148	997 bp downstream
Rr514267	regulatory region 514267	689 bp proximal
Rr514268	regulatory region 514268	1233 bp proximal
Tmem44	transmembrane protein 44	within coordinates
Tssr137879	transcription start site region 137879	1625 bp upstream