rs242415476 SNP Detail

Summary

• ID
  rs242415476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115654724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTCCTG AAAGTTATCC
  TCTGACCTCC ATTCGAACCC GGTGCTACGT GCGCAACCTG CAACCGCATT TACAAATACA
  CAGACAAGTT TTTTTTTGTT TTTTTTAAGT AACCATTTAT AAGTAAACAT CTTTTGGCAT
  TTAGTGCGTT CACAGTATTG TGTAACCACA ACTTTGGTTC CAAAACATTT CCATTACTCT
  R
  AAATAAAATT ACCCACTAAG CAGTTTAGTT TCTCACTAGC TCCCACCCAG AGCAACCACC
  AATACTCATT TTGCTACTAC AGACCTGACT TCTAGATTAT CTTGTGTGCG TGGATACTTA
  TAAAGTATGG GGCCCTTTAT GATTTAAGTC TTTTCACTTA GCCTGTTTCC GAGTTCATCT
  GTAACACATG TGTGCTAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369757472	MGP_WTSI_6_115627781	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242415476					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369757472	MGP_WTSI_6_115627781	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115654724 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17873	CpG island 17873	696 bp distal
D830050J10Rik	RIKEN cDNA D830050J10 gene	within coordinates
Raf1	v-raf-leukemia viral oncogene 1	1128 bp upstream
Rr399847	regulatory region 399847	1097 bp downstream
Rr637016	regulatory region 637016	1810 bp distal
Rr637017	regulatory region 637017	1758 bp distal
Rr637018	regulatory region 637018	1139 bp distal
Rr637019	regulatory region 637019	638 bp distal
Tssr58320	transcription start site region 58320	1807 bp downstream
Tssr58321	transcription start site region 58321	1759 bp downstream
Tssr58322	transcription start site region 58322	1009 bp downstream
Tssr62522	transcription start site region 62522	1876 bp upstream
Tssr62523	transcription start site region 62523	1185 bp upstream
Tssr62524	transcription start site region 62524	1145 bp upstream
Tssr62525	transcription start site region 62525	1121 bp upstream