rs242415511 SNP Detail

Summary

• ID
  rs242415511
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:12938701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGCATC TCGTCTCCCG
  CCTCCGCGTG GCCCGCTTCG TAGGAGACTC CCGGGTTGTG TTTGGTGAGT ACCGAGCCCG
  GCGGCGCCCA GGGCCTCCGG CTGGCTGGAG GGCTGGGGAG GACGGCGCGA GGGGGTGTGT
  GTGCGTAAGC GGTCCTCCCT TGGGGGCCTG GCTGCCGGGG TTGGGGGTCG CCCCGAGCCC
  S
  GGCCGTCGCG GGCGCGCGCG AGCCTCCGTG GTGCGCGCGG CCGGCGTCCC GCGAGCGTGT
  GTCCGTGTCC GTGAGTGAGC GTGGCGCTGT GTGTGCGTGT GTGTTTTGGA CTGGCAGGGA
  AAATGGCTGA CGGCTCCGGC CCTCCCCCTT CCTCCCCCTT CCCTGCCTGA CGGGAGTGGA
  GAGGAGGAGG AGGAGGAGAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403087108	MGP_WTSI_X_12649588	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs242415511					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403087108	MGP_WTSI_X_12649588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12938701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm61952	predicted gene, 61952			534 bp upstream
Gm61953	predicted gene, 61953			1108 bp downstream
Rr406088	regulatory region 406088			861 bp downstream
Rr690196	regulatory region 690196			938 bp distal
Rr690197	regulatory region 690197			1123 bp distal
Rr690198	regulatory region 690198			545 bp distal
Rr690199	regulatory region 690199			44 bp distal
Tssr160578	transcription start site region 160578			1380 bp downstream
Tssr160579	transcription start site region 160579			1293 bp downstream
Tssr160580	transcription start site region 160580			1165 bp downstream
Tssr160581	transcription start site region 160581			963 bp downstream
Tssr160582	transcription start site region 160582			886 bp downstream
Tssr160583	transcription start site region 160583			799 bp downstream
Tssr160584	transcription start site region 160584			423 bp downstream
Tssr160585	transcription start site region 160585			393 bp downstream
Tssr160586	transcription start site region 160586			344 bp upstream
Tssr163012	transcription start site region 163012			533 bp upstream
Tssr163013	transcription start site region 163013			86 bp downstream
Usp9x	ubiquitin specific peptidase 9, X chromosome			Intron
				mRNA-UTR