rs242417639 SNP Detail

Summary

• ID
  rs242417639
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80863577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCGGCTCC CGCCTCAGGA
  AGGGCATGTT CGGAGGGGCG TCCGCGGCGC GCCTCTCGCC CCAGCGCCCC CTCCCCACGG
  CCGCCGCGCC CGCAGCGCAA TAAAAGGGGC GGCCGCGCTT CCTGACGCGA GACCCGCGCT
  TGCCGCCGCC GCCCACCCGC CTGCCCGCCC GCCCGCTCAG GCCGCGATGA CACGGCGCCC
  R
  CGGCGGCCCC GAGGCGCCGG GCGGGCCGTT TGCTGACCGG ATCGCGGCTG CCCGCCAGCG
  AGTCCGCGGT GCCGCCGCCG CCAGTATGGG CTGCGCCCCG AGCATCCACA CTTCCGAAAA
  CCGAACGTTT AGCCACAGCG ACGGCGAGGA CGAGGACGTG GACGTGGACG TCCCGGGCCC
  CGCGCCGAGA TCTATTCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss372063455	MGP_WTSI_7_88358715	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs242417639					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372063455	MGP_WTSI_7_88358715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80863577 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	656 bp upstream
Cpgi19350	CpG island 19350	within coordinates
Gm73624	predicted gene, 73624	448 bp upstream
Pde8a	phosphodiesterase 8A	within coordinates
Tssr67494	transcription start site region 67494	545 bp downstream
Tssr67495	transcription start site region 67495	507 bp downstream
Tssr67496	transcription start site region 67496	487 bp downstream
Tssr67497	transcription start site region 67497	470 bp downstream
Tssr67498	transcription start site region 67498	333 bp downstream
Tssr67499	transcription start site region 67499	197 bp downstream
Tssr67500	transcription start site region 67500	66 bp downstream
Tssr67501	transcription start site region 67501	within coordinates
Tssr67502	transcription start site region 67502	216 bp upstream
Tssr73321	transcription start site region 73321	669 bp upstream
Tssr73322	transcription start site region 73322	616 bp upstream
Tssr73323	transcription start site region 73323	158 bp upstream
Tssr73324	transcription start site region 73324	149 bp upstream