About   Help   FAQ
rs242422303 SNP Detail
Summary
  • ID
    rs242422303
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:131195256 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGTACTTTC CAGCCTTAAT
    TACTAACCTC ATTAATCCTT ACTTAATCGT TGCTATTGTC TAAGGTAGTC CTAATGCCAT
    TTTTACCTGT TCGGGATGGT TAACATAACC GAGGTGAAAC CAAAGAACTG AACAGTTAAA
    GGATTCAAAG TTCACGCGAA CACACTGACA AAAAGAGTTG AGCCTCTTCA GTATTTCAAA
    Y
    ACATGTCAAA ATAATTTAAG GTCATTTTAG AAATAAGCAA GTCTTGGAAA TAGAGGAACG
    GCGGATTAAT AAAAGATTAC AGGATATAGC ATTTGAACTA TTTGCTTCTG AGACAGAACG
    ATCACCGGAC CCACAGATTG TGACGGGGTA AGGTCCACTC CCACCTCTCT GTGCTGACAA
    ATCGAATCTC CCTTCCTTAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359739287 MGP_WTSI_3_131152459 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242422303 SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359739287 MGP_WTSI_3_131152459 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:131195256 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13839 CpG island 13839 117 bp proximal
Gm36753 predicted gene, 36753 821 bp upstream
Rr585350 regulatory region 585350 604 bp distal
Rr585351 regulatory region 585351 397 bp proximal
Rr585352 regulatory region 585352 910 bp proximal
Rr585353 regulatory region 585353 1170 bp proximal
Sgms2 sphingomyelin synthase 2 within coordinates
Tssr1055 transcription start site region 1055 217 bp upstream
Tssr1056 transcription start site region 1056 510 bp upstream
Tssr31735 transcription start site region 31735 242 bp upstream
Tssr31736 transcription start site region 31736 856 bp upstream
Tssr35707 transcription start site region 35707 474 bp upstream
Tssr35708 transcription start site region 35708 445 bp upstream
Tssr35709 transcription start site region 35709 252 bp downstream
Tssr35710 transcription start site region 35710 268 bp downstream
Tssr35711 transcription start site region 35711 416 bp downstream
Tssr35712 transcription start site region 35712 442 bp downstream
Tssr35713 transcription start site region 35713 683 bp downstream
Tssr35714 transcription start site region 35714 957 bp downstream
Tssr35715 transcription start site region 35715 1015 bp downstream
Tssr35716 transcription start site region 35716 1158 bp downstream
Tssr35717 transcription start site region 35717 1234 bp downstream
Tssr35718 transcription start site region 35718 1252 bp downstream
Tssr35719 transcription start site region 35719 1495 bp downstream
Tssr35720 transcription start site region 35720 1558 bp downstream
Tssr35721 transcription start site region 35721 1780 bp downstream
Tssr35722 transcription start site region 35722 1832 bp downstream
Tssr35723 transcription start site region 35723 1891 bp downstream
Tssr35724 transcription start site region 35724 1904 bp downstream
Tssr35725 transcription start site region 35725 1942 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory