rs242427696 SNP Detail

Summary

• ID
  rs242427696
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184465969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCGCCT TCCATTCTTG
  CTAGGGTCTT TAGAACTCAG CCTAGGTGCA CTGGGAATTT TCTGTCGCAT CAACATCTCT
  ATTTTAAGAA TTCGTTCTCT TTTAAATTAT AGTCAGAGTG GATTTCCCCG CCCCTCTCCC
  AAACAGACCA CAGGCCACCT AGATGAACGG TTGTTGCACA TTTCAGGAAG AAAATAAAAT
  W
  ATGACAATAA CGAAACCACC AAATCTTTTG TTTTCGATTG TCCAAGTAAG TGTCTCCGGA
  ATGATATTCC AAGGCAGGCT TATTTCCCCT CAGCAATAAG ATACCAAAAA CTGGAAGCCG
  TGAGGGAACT GCCAGGCTAC TATCAGCTCA GGATTGGCGT GAGCTCTTGG ATTAATGTCT
  AACAGCTTCG TGTCCTTGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352673747	MGP_WTSI_1_186557651	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242427696					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352673747	MGP_WTSI_1_186557651	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184465969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1158	CpG island 1158	533 bp distal
Cpgi1159	CpG island 1159	803 bp proximal
Gm34342	predicted gene, 34342	within coordinates
Hlx	H2.0-like homeobox	1279 bp upstream
Rr396693	regulatory region 396693	922 bp downstream
Rr425266	regulatory region 425266	988 bp distal
Rr425267	regulatory region 425267	within coordinates
Rr425268	regulatory region 425268	396 bp proximal
Tssr10589	transcription start site region 10589	968 bp downstream
Tssr10590	transcription start site region 10590	1634 bp upstream
Tssr15637	transcription start site region 15637	1890 bp upstream
Tssr15638	transcription start site region 15638	1823 bp upstream
Tssr15639	transcription start site region 15639	1654 bp upstream
Tssr15640	transcription start site region 15640	1623 bp upstream
Tssr15641	transcription start site region 15641	1585 bp upstream
Tssr15642	transcription start site region 15642	1333 bp upstream
Tssr15643	transcription start site region 15643	1281 bp upstream
Tssr15644	transcription start site region 15644	1247 bp upstream
Tssr15645	transcription start site region 15645	1227 bp upstream
Tssr15646	transcription start site region 15646	1145 bp upstream
Tssr15647	transcription start site region 15647	1078 bp upstream
Tssr15648	transcription start site region 15648	1248 bp downstream