rs242428297 SNP Detail

Summary

• ID
  rs242428297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTCCGA AACAAGTCCT
  TAGCCTCCAG GGTCTGAGCA GGGGATCGGA TCCCAGACCG GTCCAATTAT AGGACTCCCC
  CTGTCCCGCC CCCTCCTCAG GGCTAGGGCG GGCTGTGCCA GCCCCCTGTC ACGAGGCGGG
  TTGTTCTCTC CCCCTTCACA GCAGGGCAGA GGAAAGAGGT GGAGTTTGGA TGCCTTGTGA
  Y
  CCCCCGCTCC CCTCCCCCGC CAACAAAGGG AGCGGACACC TCATTGAATA ATCCAGGCCT
  TGGTACTGGG GCACTGAGAA CCGCTCCTTC CCTTTCCCCG CGGGGTCTGG TGCATTGTAA
  AGAAAAGAGC TGGCAGCCTA AATGGAAATG GGTGGGTGGG GGCTAAGAGG CTCAGCTTCT
  GGGGTGAAGA TCGTTGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754828	MGP_WTSI_7_20284563	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242428297					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754828	MGP_WTSI_7_20284563	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433139 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	413 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1295 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	317 bp distal
Rr643243	regulatory region 643243	918 bp distal
Rr643244	regulatory region 643244	within coordinates
Rr643245	regulatory region 643245	1116 bp proximal
Tssr2122	transcription start site region 2122	1549 bp upstream
Tssr64894	transcription start site region 64894	1716 bp downstream
Tssr64895	transcription start site region 64895	1637 bp downstream
Tssr64896	transcription start site region 64896	1613 bp downstream
Tssr71000	transcription start site region 71000	1692 bp upstream
Tssr71001	transcription start site region 71001	1626 bp upstream
Tssr71002	transcription start site region 71002	1607 bp upstream
Tssr71003	transcription start site region 71003	1579 bp upstream
Tssr71004	transcription start site region 71004	1561 bp upstream
Tssr71005	transcription start site region 71005	1216 bp upstream
Tssr71006	transcription start site region 71006	1183 bp upstream
Tssr71007	transcription start site region 71007	1121 bp upstream
Tssr71008	transcription start site region 71008	1015 bp upstream
Tssr71009	transcription start site region 71009	953 bp upstream
Tssr71010	transcription start site region 71010	833 bp upstream
Tssr71011	transcription start site region 71011	809 bp upstream
Tssr71012	transcription start site region 71012	779 bp upstream
Tssr71013	transcription start site region 71013	151 bp upstream
Tssr71014	transcription start site region 71014	380 bp downstream
Tssr71015	transcription start site region 71015	505 bp downstream
Tssr71016	transcription start site region 71016	741 bp downstream
Tssr71017	transcription start site region 71017	1190 bp downstream
Tssr71018	transcription start site region 71018	1231 bp downstream