rs242428354 SNP Detail

Summary

• ID
  rs242428354
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:88970619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTTTTT TTGCTAGTGA
  TTCCCTGCGC GACCCCTGAC TAGCAAATAT CAATGTTCTT GGCCGATGAC AGCGGACAGG
  GTTGTGAGGT TGTGATAGAG ACCTGACAGA GCTAAGTGTG CTGGGCCATC ATCTAGTAGG
  TGCTAGAATA GCCTGGATAA CCACCGGGCG GTAAGCTGGA TGCAGTGCTC TGGTGCAGGG
  M
  CAGGGGTGGG GGTGGGGGTG GGGGCTAAGG GGTCTGTCAA CCTGGACCCG ATATTGAGAG
  TTCATACTGC CAATGAGAAA GAGAGAGGTC TACTAAGTCG CTAGCTTTCT CCCCAACCCT
  CCTCTTGGGC GCGTGACTTC AATTACAACA GCTCAAACAA CTCTCTTCTC CTCCAACCCC
  AGGGGGCTTG AGCATTATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389409049	MGP_WTSI_13_88962105	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242428354					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389409049	MGP_WTSI_13_88962105	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88970619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5919	CpG island 5919			218 bp distal
Cpgi5920	CpG island 5920			1138 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3			Intron
				Noncoding-Transcript-Variant
Gm38504	predicted gene, 38504			1684 bp upstream
Rr483401	regulatory region 483401			848 bp distal
Rr483402	regulatory region 483402			1220 bp distal
Tssr120562	transcription start site region 120562			980 bp downstream
Tssr120563	transcription start site region 120563			920 bp downstream
Tssr120564	transcription start site region 120564			909 bp downstream
Tssr120565	transcription start site region 120565			897 bp downstream
Tssr120566	transcription start site region 120566			877 bp downstream
Tssr120567	transcription start site region 120567			824 bp downstream
Tssr120568	transcription start site region 120568			816 bp downstream
Tssr120569	transcription start site region 120569			781 bp downstream
Tssr120570	transcription start site region 120570			761 bp downstream
Tssr120571	transcription start site region 120571			739 bp downstream
Tssr120572	transcription start site region 120572			586 bp downstream
Tssr120573	transcription start site region 120573			558 bp downstream
Tssr120574	transcription start site region 120574			524 bp downstream
Tssr120575	transcription start site region 120575			1091 bp upstream
Tssr120576	transcription start site region 120576			1714 bp upstream
Tssr123374	transcription start site region 123374			705 bp upstream