rs242444789 SNP Detail

Summary

• ID
  rs242444789
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72889026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACTGTGA CAAGCATGGC
  CGGTACAACC TTAAGCAGGT GAGTGTGGGC CAGCCTGGGC TAGGGAGGCC CTTCCTCAGC
  CCCGGAGCCC TGTTGTGTCT AGTCTGCTGC ATCTGCTTGT ATAGTCCCTG GGAGCTAAGA
  GCTGAGCTTG GATGCAGTGG TCTGTAAACT GAAGGTTGGG TGGGTGATAC CTCAGCTCCG
  K
  GAGGCTTCCC TCCTTGGCCT CAGGCGGGGC AGGTCTAACG CCACTCTCAG CTGGCTTCTT
  CTCTCTGTGC TCAGTGTCTG TCAGGAAAGT GCCCTGGAGA ACTGAGAAGT AGGGTTAAGC
  CCTTGCAGCT CAGCTCTTCC AGAGGTTTGG ATGTAGCTAC AGTAGAAGTA AGTTTCAACC
  TAAACCAGTA TACCTGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350087109	MGP_WTSI_1_72896441	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242444789					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	G	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350087109	MGP_WTSI_1_72896441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72889026 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	781 bp downstream
Tssr7322	transcription start site region 7322	723 bp downstream
Tssr7323	transcription start site region 7323	684 bp downstream
Tssr7324	transcription start site region 7324	653 bp downstream
Tssr7325	transcription start site region 7325	633 bp downstream
Tssr7326	transcription start site region 7326	598 bp downstream
Tssr7327	transcription start site region 7327	577 bp downstream
Tssr7328	transcription start site region 7328	258 bp downstream
Tssr7329	transcription start site region 7329	246 bp downstream
Tssr7330	transcription start site region 7330	213 bp downstream
Tssr12178	transcription start site region 12178	743 bp upstream
Tssr12179	transcription start site region 12179	694 bp upstream
Tssr12180	transcription start site region 12180	631 bp upstream
Tssr12181	transcription start site region 12181	601 bp upstream
Tssr12182	transcription start site region 12182	568 bp upstream
Tssr12183	transcription start site region 12183	556 bp upstream