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rs242449058 SNP Detail
Summary
  • ID
    rs242449058
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:6366451 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AGAGC CCGGACGTGC TCGTTAGCCC
    R
    GTTAAACCTA GTGGTTTCCT AAACC                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323549892 CHEV_11_6316454 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs242449058 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:6366451 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2558 CpG island 2558 within coordinates
Gm71788 predicted gene, 71788 738 bp upstream
Ppia peptidylprolyl isomerase A within coordinates
Rr246944 regulatory region 246944 within coordinates
Rr402411 regulatory region 402411 373 bp downstream
Tssr100250 transcription start site region 100250 668 bp downstream
Tssr100251 transcription start site region 100251 638 bp downstream
Tssr100252 transcription start site region 100252 584 bp downstream
Tssr100253 transcription start site region 100253 219 bp downstream
Tssr100254 transcription start site region 100254 134 bp downstream
Tssr100255 transcription start site region 100255 106 bp downstream
Tssr106715 transcription start site region 106715 760 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory