rs242450131 SNP Detail

Summary

• ID
  rs242450131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53746722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCTGTCGG ACCCTGCCTT
  CCGCGTCCCG GGAGCCGCAC GGGACGAACA CCTGTCGGGG CCCCGGCTCT GCGCGATGTA
  GGGCGCACGC CCAGCCGCCC GCGGGGTGGG TAGGAGAGCG CGTTCTCGCG AGGCTTAGGA
  AATTTCCCAC GGCCCGTGTT GTGTCTGAGC CGAGCGGTGG AAGGCGCTCG GGAGGAGGTG
  Y
  AGCGTGAGAC TCCGGCTGCC CGCATTGCGC ACATGCGCAG TGGCGCGAGC GCGCCGCGCC
  AATCCTGCGG CGCTCCGGAG CGGGTCTCGG GCGGGCTGAT CCAGTTCTCC GGGTTTTTTG
  TGGCTCCCTG CGGGAGGCAG GCAATGCAGG AGCTGGGAAA TCTCTTGGAA AGCAAAGGGC
  CGGGAAGGGG GGGGGGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364963841	MGP_WTSI_5_53980619	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242450131					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364963841	MGP_WTSI_5_53980619	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53746722 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15869	CpG island 15869	within coordinates
Rbpj	recombination signal binding protein for immunoglobulin kappa J region	within coordinates
Rr367840	regulatory region 367840	294 bp downstream
Rr611644	regulatory region 611644	657 bp distal
Rr611645	regulatory region 611645	10 bp distal
Rr611646	regulatory region 611646	344 bp proximal
Rr611647	regulatory region 611647	1111 bp proximal
Rr611648	regulatory region 611648	1612 bp proximal
Tssr46224	transcription start site region 46224	613 bp downstream
Tssr46225	transcription start site region 46225	415 bp downstream
Tssr46226	transcription start site region 46226	49 bp upstream
Tssr46227	transcription start site region 46227	959 bp upstream
Tssr46228	transcription start site region 46228	973 bp upstream
Tssr46229	transcription start site region 46229	1042 bp upstream
Tssr46230	transcription start site region 46230	1073 bp upstream
Tssr46231	transcription start site region 46231	1276 bp upstream
Tssr46232	transcription start site region 46232	1293 bp upstream
Tssr46233	transcription start site region 46233	1341 bp upstream
Tssr46234	transcription start site region 46234	1679 bp upstream
Tssr46235	transcription start site region 46235	1853 bp upstream
Tssr46236	transcription start site region 46236	1868 bp upstream
Tssr51023	transcription start site region 51023	115 bp upstream
Tssr51024	transcription start site region 51024	798 bp downstream
Tssr51025	transcription start site region 51025	1192 bp downstream