rs242452193 SNP Detail

Summary

• ID
  rs242452193
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70991112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTCCAG CTGCCATTCT
  AGGGTCCCTC ATTTGCAGTC ACACTGACCT TGCCTGGTTT GCAAGGCTGA GAAGGGGGAT
  GGCATGTGGA GCAGTGGCTG CAGTTTTCAG GGTGCTCACT CCAGCCTACA CTGAGCTGAG
  ATGCCCCAGA GTGGCTCTTT ATAAGCCTGA ATGAAGTGTC ATACATCTCA GAAAGGACAG
  R
  GCGGAATCAA GATGAACTGA TCTGTGTATG CATATCCCTC TCTCTCTCTC TCTGCTCCCT
  CCCTTTCTCT CTCAGTCGTT CATATGAAAA ATATTGTCAA AGAGTACAGT TTTGTTGACT
  TACTGTTTCA TTCTTTTATA ATTCCACGCA CCTACACTAT GTTCTTTTAT TAAAGCCTCC
  CATTATCTCC TGTTAAGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417496	CHEV_13_70981871	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242452193					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70991112 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	1182 bp upstream
Cpgi5821	CpG island 5821	1153 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482303	regulatory region 482303	1250 bp distal
Rr482304	regulatory region 482304	692 bp distal
Tssr123158	transcription start site region 123158	1277 bp upstream
Tssr123159	transcription start site region 123159	1239 bp upstream
Tssr123160	transcription start site region 123160	1210 bp upstream
Tssr123161	transcription start site region 123161	1183 bp upstream