rs242465947 SNP Detail

Summary

• ID
  rs242465947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:8474724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCAGGCG CTCCGGGCCT
  CATAGCCCCC CACCCTCAAT CCCGGAGAAG GCGGCCAGCC GAGGCCGCGC TGCTCTCCCT
  GACTGGCCGG CCCCGGGCCC CGGGGGGAAG CCGAGCTCCC GCTGCCGGCG GGTTGGATGC
  CGACCTTTCA AACGCTGTTC CCGCAGCCGT GATGGATGGA TCGTCCCGGG AGCGGCCGGA
  Y
  CCTATGTCTG TCTGGGTTAT TTTCTGCGAA GAACACAGTC CTCGGAGGTG AAGACTCCCA
  GCCTGGCTGA GTTGGAATCG TGATCGTGGT GGTGGTGGTG CATTAATTTC TGGAAATACG
  AGAGGGCTGC TGGACTTGCC TCTTTTTTTT TTTTTTTTTT TTTTTTTTTT CCTTTTTGGC
  GGTGGTTTTG ATTGCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392965651	MGP_WTSI_15_8395240	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242465947					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392965651	MGP_WTSI_15_8395240	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8474724 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	Coding-Synonymous
Cpgi6933	CpG island 6933	within coordinates
Cpgi6934	CpG island 6934	741 bp proximal
Gm63261	predicted gene, 63261	86 bp upstream
Nipbl	NIPBL cohesin loading factor	Intron
Rr369900	regulatory region 369900	within coordinates
Rr499034	regulatory region 499034	788 bp distal
Rr499035	regulatory region 499035	within coordinates
Rr499036	regulatory region 499036	97 bp proximal
Rr499037	regulatory region 499037	214 bp proximal
Rr499038	regulatory region 499038	1296 bp proximal
Tssr4546	transcription start site region 4546	363 bp upstream
Tssr130591	transcription start site region 130591	1604 bp downstream
Tssr130592	transcription start site region 130592	491 bp downstream
Tssr130593	transcription start site region 130593	267 bp downstream
Tssr130594	transcription start site region 130594	170 bp upstream
Tssr130595	transcription start site region 130595	325 bp upstream
Tssr130596	transcription start site region 130596	948 bp upstream
Tssr133664	transcription start site region 133664	1031 bp upstream
Tssr133665	transcription start site region 133665	994 bp upstream
Tssr133666	transcription start site region 133666	792 bp upstream
Tssr133667	transcription start site region 133667	734 bp upstream
Tssr133668	transcription start site region 133668	572 bp upstream