rs242478557 SNP Detail

Summary

• ID
  rs242478557
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78715845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agagcagcc tggcctcgaa ctcacagagc
  tccacctgcc tctgcctctg gagtgtttgg attaaaggtg tgcacctcct tgcctggctT
  GGATTATTCT TAAATCCAAG TTCTCACTGT GACTCGGTAA AAGAAAGGGA GCTGCTATCC
  M
  CATCTCTCCC TCAAGCTAAA AAATAAAAAA ATTTCTTTTC TGTTCTTTCT CTTTTGTGCT
  GCCTAGCTGT CGACAAAGAG TTTTCGAGAA AGATAAATGT TGTGTCTCTG TAAAGACAGA
  AGTAACACAA GAGGCAGGAA GGTGGAGCCT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323757667	CHEV_11_78638521	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242478557					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78715845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	1410 bp proximal
D11Bhm78	DNA segment, Chr 11, Boehm 78	1453 bp distal
D11Bhm79	DNA segment, Chr 11, Boehm 79	441 bp distal
Gm23219	predicted gene, 23219	546 bp downstream
Lyrm9	LYR motif containing 9	1576 bp upstream
Rr452072	regulatory region 452072	1548 bp distal
Rr452074	regulatory region 452074	131 bp proximal
Rr452075	regulatory region 452075	1100 bp proximal
Rr452076	regulatory region 452076	1502 bp proximal
Rr452077	regulatory region 452077	1576 bp proximal
Rr452078	regulatory region 452078	1585 bp proximal
Rr452079	regulatory region 452079	1759 bp proximal
Tssr103332	transcription start site region 103332	1556 bp upstream