rs242483782 SNP Detail

Summary

• ID
  rs242483782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192452651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCACAGCCC TTCAAAGCTT TCCCTGAGCC
  GCGTCCTGTG GCACTGGAGC AGATGCTCAG CTCTACATAA TAGAACACCA CACTGAACGG
  AGCAGACACA CTGCATAACG CTGTCAGTCC CCACACGTAG AAGGCCCTGA TCTAAAAGCG
  R
  CCAATAGCTG TTGAATCTGG GGGAGGAGAG CCTGCATAAA AACTGGTGTC TCCCAGTCTT
  GCCACTGAAC AGATGAGGGA AACTAAGTCC AGAGAGTTTC TGGAAAGCGA AAGAGATCTT
  TAAACTGAGA ACTGGGGCTC GGTGGTTAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320200022	CHEV_1_194596537	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242483782					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192452651 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1234	CpG island 1234			135 bp proximal
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426393	regulatory region 426393			within coordinates
Rr426394	regulatory region 426394			234 bp proximal
Rr426395	regulatory region 426395			860 bp proximal
Tssr15828	transcription start site region 15828			856 bp downstream