rs242486036 SNP Detail

Summary

• ID
  rs242486036
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24306163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC CGCCGCCCTG TCACCCAAGT
  A
  GCACGAGTTG ATAAATCACC TGTCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321493910	CHEV_5_23606983	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242486036					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24306163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15589	CpG island 15589	within coordinates
Gm71592	predicted gene, 71592	669 bp upstream
Klhl7	kelch-like 7	within coordinates
Rr377704	regulatory region 377704	1545 bp upstream
Rr398996	regulatory region 398996	433 bp downstream
Rr608239	regulatory region 608239	685 bp distal
Rr608240	regulatory region 608240	532 bp distal
Rr608241	regulatory region 608241	within coordinates
Rr608242	regulatory region 608242	525 bp proximal
Tssr45399	transcription start site region 45399	496 bp downstream
Tssr45400	transcription start site region 45400	467 bp downstream
Tssr50303	transcription start site region 50303	680 bp upstream