rs242489900 SNP Detail

Summary

• ID
  rs242489900
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:130167102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTCTGG TCTGTTGGTA
  GAAGGAGGTC CAGAGCACTG AAGACTGATC TAGAATCTGA GAGTGGTAGG AAGAACCCTG
  TGTGATAAAA GGAAGAGAGA ACACACTTGC GATATAAACC TGTGAGTCCT ATGTTCTATC
  GTCACTTCTC TCCCTCCCTC CTTCCCTTCC TCCATGCCTC CTTTCTCCCC CTTCTTCCCT
  C
  ATCTTTCCTT ACCCCTTCTT ATCTCTGTCT AGTTTTTTTT ACTCTAAAAT GAGTGTCCAG
  GATTAGATTT CCCTCTGGTC CCTCTGGACA TTATATAAGG ATAGGCACTA TTGAAGTAGA
  GAATGATTTA ATGGACAGAA CTAGATGAGG ATTCCCCAGT ACTCATGTAA AAGCTAGAAG
  TGGTGGTGCA ATCTGTTACT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323545585	CHEV_10_129768289	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242489900					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:130167102 () rs orientation: forward

Symbol	Name	Function Class
Rr441430	regulatory region 441430	667 bp distal
Rr441431	regulatory region 441431	51 bp distal
Tespa1	thymocyte expressed, positive selection associated 1	within coordinates
Tssr96492	transcription start site region 96492	254 bp downstream
Tssr96493	transcription start site region 96493	202 bp downstream
Tssr96494	transcription start site region 96494	1743 bp upstream