rs242491425 SNP Detail

Summary

• ID
  rs242491425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119233087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCACTGTT GGGAAGCGGT
  TTCAGTGCTG TCCTGGAGTG GTAGAGGCAA CGCGGTGCTC AGGGTGAACA TTTTGTTTCT
  TTCTGCCACT CCCCGAAGTG TTGCTCCAGA GATTTTTCAC CCCAAGAATG AGAGCCTGGA
  AGTGATGGAA AACAGTGGTC TGCTCCGGGG AGGGCGGCAG CAGGCTGACC CCAAGTTATA
  S
  GACCAACCTC TAGTCGGCTC TTGACTTACT GGATTTCTGC ACCTGGACAT GTATGTGCCT
  TGCCTCTTTT AAGTTTAGGT TTGTTGAAAG CATTGTCTCA GGACCGTTCG CCTCAGACTA
  GAAGTCTGTA TGTACATCAC TGCTCCTGTT TGTTCCAGTT TGACCTCACC AGTCACTTCC
  CATTTGGAGG GGCAGAGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379136884	MGP_WTSI_9_119313139	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	C	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242491425					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	C	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379136884	MGP_WTSI_9_119313139	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119233087 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	within coordinates
Cpgi22474	CpG island 22474	377 bp distal
Gm47320	predicted gene, 47320	1087 bp downstream
Rr688481	regulatory region 688481	1567 bp distal
Rr688483	regulatory region 688483	within coordinates
Rr688484	regulatory region 688484	1480 bp distal
Rr688485	regulatory region 688485	1320 bp distal
Tssr87682	transcription start site region 87682	1868 bp downstream
Tssr87683	transcription start site region 87683	1796 bp downstream
Tssr87684	transcription start site region 87684	1752 bp downstream
Tssr91983	transcription start site region 91983	535 bp upstream