rs242500738 SNP Detail

Summary

• ID
  rs242500738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152914915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTCTGTAA TGGAGCTGCT AAGGGCTGTT
  CTTTTTGTTT GTTTGTTTGT ttttgttttt tgagactggg tttctctgtg tagccctggc
  tgtcctggaa ctcactttgt agaccaggct ggcctcgaac tcagaaatcc gcctgcctct
  R
  cctcccaagt gctgggatta gaggcatgcg ccaccactgc ccggctTGGA CTAAGTCTTA
  TAAGCAACTT TTTGTGCTTT GTTGTGAGAC AGGGTCTCTC TGCACAGCTc tgacttgccc
  actgaatgct gggattatgg gtgtatccca                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320070027	CHEV_1_154886294	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242500738					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152914915 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			49 bp proximal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420580	regulatory region 420580			959 bp distal
Rr420581	regulatory region 420581			793 bp proximal
Rr420582	regulatory region 420582			1188 bp proximal
Rr420583	regulatory region 420583			1367 bp proximal