rs242501339 SNP Detail

Summary

• ID
  rs242501339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57763876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTCTGGG GAAACTAATA
  TGGGGATAGA ACCTCAGATG AGAAGCAAAG TTTCCAGCGT GAGGTAGCCT GAAGTTGAGG
  GAGGAAGAGA ACACCCCTTT GAAGGAGAAA GTGACATTCA GGCCTTGTGG AGAATGGGCA
  AGATTTTGAG GATGGCCCAA TCCAGGTGTT GTGTCAAAAG AAGAGCATGT CCAAGGGAAG
  Y
  ATGGGGATGT GGAGCGTGGC CACAGTGGCC TGGGCAGATG CCCGTGACAG GATGCATAAG
  TAGCTCGGAT GAGGGAGCCC TCACTCCACC CTGTAGATGA GAAAGATAGG CAGGCACCTT
  GGACGAGAGC CTTTCCAGGA TGGGGGTGGA CTCTAGGTAA GGGCTGTGTG GGCAGAGGAG
  AGGAATAATG TCGAGTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391194841	MGP_WTSI_14_58145256	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242501339					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391194841	MGP_WTSI_14_58145256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57763876 () rs orientation: forward

Symbol	Name	Function Class
AU020094	expressed sequence AU020094	1584 bp distal
Cpgi6542	CpG island 6542	366 bp distal
Il17d	interleukin 17D	within coordinates
Rr404129	regulatory region 404129	629 bp downstream
Rr492824	regulatory region 492824	1927 bp distal
Rr492825	regulatory region 492825	1632 bp distal
Tssr125870	transcription start site region 125870	1615 bp downstream
Tssr125871	transcription start site region 125871	1314 bp downstream
Tssr128966	transcription start site region 128966	952 bp upstream
Tssr128967	transcription start site region 128967	894 bp upstream
Tssr128968	transcription start site region 128968	774 bp upstream