rs242503047 SNP Detail

Summary

• ID
  rs242503047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44399077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTGTCTT TAAAAAAAGA
  ATCCAGCCCT GCCTAAGGAC TGGAGAGTTG GTTCAATATT TGAGTGCTTA CTGTCTTCCG
  GAGGACTCAA GTTGGTTCCC AGTTCATGAC TGCCTGTAAC CCTAGTTCTA GGGAATTAGG
  GATTGGCCTT CACACGGGTT CATATGCACA TAACTGTAGT GAAAATTCTG GAATTTTCAT
  Y
  TCTTTAAAAA AAACACAGAA ATATAAGAAT ATGTTTTTGT TTCAATCCCA GGAGTGGGGC
  TATGGGGCTG CTTCTCCGCA GCTGACTAAG CTTTGCCTCC TGCTCCAGCA GCTCATGATT
  TTGCCAGCTG CACATAGTTT CTACAACTGT GTGACGTTTG GAATTCTGGG AACTTCTCAG
  AGAGTCTGTA AATACTAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371162762	MGP_WTSI_7_52005023	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242503047					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371162762	MGP_WTSI_7_52005023	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44399077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18993	CpG island 18993	607 bp distal
Rr400296	regulatory region 400296	1057 bp downstream
Tssr66420	transcription start site region 66420	1093 bp downstream
Tssr66421	transcription start site region 66421	1019 bp downstream
Tssr66422	transcription start site region 66422	1002 bp downstream
Tssr66423	transcription start site region 66423	725 bp downstream
Tssr66424	transcription start site region 66424	656 bp downstream
Vrk3	vaccinia related kinase 3	within coordinates
Zfp473	zinc finger protein 473	1036 bp upstream