rs242511290 SNP Detail

Summary

• ID
  rs242511290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87008773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGTTGA GCAAAAGGAG
  ACCAAGAGCT GCATTTGTGC TACTTTGAAC AAGACAATGA CCATGATACA AGAACTACAA
  AAGCAAACAA ACCTGGAGGT AATGTTTCCA GTTTATAGGT TGGAATTGTG AAGTTATTCC
  CCACCCCCAC TGCCACCCCC AGTACAGGTT TCTCTGTGTA GCCCTGGCTG TCCTGGAACT
  Y
  ACTCTGTAGA CCAGGCTGGC CTCGAACGCA TAAATCCACT TGCCTCTGCC TCCTGAGTTT
  GTGCTGCTAC TGCTTGTTGG ATTTGTGAAG TTTAAGTTGT GAATATTGTT TAAAAAAAAT
  AAAACCCCAA TATGTTGTGC CACATCCGTG CACTGCTCCC AGGCTCTTGG ACCTGACTGG
  GGTGGTGAAG GAATGAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772706	CHEV_11_86931449	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242511290					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87008773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant