rs242516639 SNP Detail

Summary

• ID
  rs242516639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28045235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTGGGAGG TTGGGCATGT ATCTGCTTGG
  GGGTGGGCGT GGCACGGGAG GTTGGGCATG TATCTGCTTA GGGGGGTGGG CGTGGTGTGG
  GAGGTTGGAC ATGTATCTGC TTGGGGGTGG GCGTGGCACG GGAGGTTGGG CATGTATCTG
  Y
  TTAGGGGGGT GGGCGTGGCA AGGGAGGTTG GGCATGTATC CGCTTCTGGT TTGTACTTTC
  CTCCCCTCCC TTCTGCCTTC TCCAGCTTTC AGTCTCGATT CTGCTCTATC ATGTGAGTTT
  GTAGAACTAG CTGGTCTCAA CTGTGGGGTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325349854	CHEV_17_27963206	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242516639					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28045235 () rs orientation: forward

Symbol	Name	Function Class
Gm65125	predicted gene, 65125	within coordinates
Rr405125	regulatory region 405125	within coordinates
Rr405126	regulatory region 405126	996 bp upstream
Rr524320	regulatory region 524320	984 bp distal
Rr524321	regulatory region 524321	within coordinates
Rr524322	regulatory region 524322	148 bp proximal
Rr524323	regulatory region 524323	975 bp proximal
Tssr143360	transcription start site region 143360	1012 bp downstream
Tssr143361	transcription start site region 143361	961 bp downstream
Tssr147072	transcription start site region 147072	217 bp upstream
Tssr147073	transcription start site region 147073	663 bp downstream