rs242527766 SNP Detail

Summary

• ID
  rs242527766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19297146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATCAAA TGTAAATTAC
  AATATTAGAC GAGTCTGCTA GGTATTCATG AACCTGCTAT AAAAACAAAA CAAAACAAAA
  ACTGGGAGCA GGAATTCCAA AGGCTCGGGA TGAACCAGCT GACCAAACCT GAGCGAGCCT
  AAGCCACACC TCCAAGGGGT CGATTCCAAA GCTCAGGATT CATCTGGGCA CTTTCGCTTT
  Y
  CCTTCTCAGC TCATTAAAGC CCACTGGCAC AGGGACTGAA ACCACAGAAC GGGATTTGAG
  GAGGGTCGAG CACAGCATTG CCAAGTAGAG AGCTAGGCTG GAACTGGAGG GAGGCTCCAG
  TGTGAACTGA TAACTGAGAC CACTGCTAAG GGTAGCTGCT TTCCTCTTCA CAGTTGGGGG
  TTAGCACACT TTGGAGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370752020	MGP_WTSI_7_20148570	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242527766					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370752020	MGP_WTSI_7_20148570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19297146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	412 bp distal
Gemin7	gem nuclear organelle associated protein 7	1728 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	145 bp upstream
Rr643188	regulatory region 643188	714 bp distal
Rr643189	regulatory region 643189	within coordinates
Rr643190	regulatory region 643190	1346 bp proximal
Rr643191	regulatory region 643191	1430 bp proximal
Tssr70928	transcription start site region 70928	1055 bp upstream
Tssr70929	transcription start site region 70929	1024 bp upstream
Tssr70930	transcription start site region 70930	973 bp upstream
Tssr70931	transcription start site region 70931	820 bp upstream
Tssr70932	transcription start site region 70932	784 bp upstream