rs242528991 SNP Detail

Summary

• ID
  rs242528991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11335979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGGGAA GAGGGAGGGA
  GGGAGGGAGG GAGGGAGGGA GGGAGGGAGG GAGGGAGGGA GGGAAATATA TATATATTTC
  TCTTCTGTAT ATATACACTG ACTGGGTTCA TCACTTGAGT CAATGCTAAG ATAGACCTGA
  GAAGAGCATC CCAAGGAAGG AAGGGTTGTT GTGGCTCACA GTTCCAAGGA TGCAGTCCAC
  R
  GTGGGAAAGG ACAGCAGCTG TGTGGGGCAG CGGGTCACAC ATTCTGCATT CAGGAAGCAG
  AGTGGTGCCT GAGGCTGCTC AGCTCTATTT CTCCTCTGTT CAGTCAGAGA CTCCAACCCA
  GACCATTCAG GGTGGGTTCT ACTTCAATTA ATATAATCTA GATAGTACTT TACAGACAAA
  CCCAGGTATC TGTTTCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353092464	MGP_WTSI_2_11252795	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242528991					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353092464	MGP_WTSI_2_11252795	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11335979 () rs orientation: forward

Symbol	Name	Function Class
Gm37851	predicted gene, 37851	1657 bp upstream
Gm38171	predicted gene, 38171	within coordinates
Gm75637	predicted gene, 75637	1591 bp upstream
Rr396766	regulatory region 396766	310 bp upstream
Rr551765	regulatory region 551765	1265 bp distal
Rr551766	regulatory region 551766	260 bp proximal
Rr551767	regulatory region 551767	506 bp proximal
Rr551768	regulatory region 551768	1460 bp proximal
Rr551769	regulatory region 551769	1602 bp proximal
Tssr404	transcription start site region 404	1425 bp downstream
Tssr405	transcription start site region 405	1620 bp upstream
Tssr406	transcription start site region 406	1643 bp upstream
Tssr22607	transcription start site region 22607	1383 bp downstream
Tssr22608	transcription start site region 22608	1403 bp downstream