rs242530108 SNP Detail

Summary

• ID
  rs242530108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28391835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCACTCA CTAACACTAC
  TAGTCACTTA GGAAGGTCAC GGCCTCTAAG AGCCTCGGTT CCTTTTCTGT GTTAAGATGT
  TCGGGGAGCT GACGAGATGG CTCATTTCAA AGGTCCTGAG TTCAAATCCC AGCAACCACA
  TGGTGGCTCA CAACCATCCA GAATGAGATC CGATGCCCTC TTATGGTGTG TCTGAAGACA
  R
  CTACAGTATA CTTATGTATA ATAATAAATC TTTGGGTTGG AGCAAGCAGA GACTCAGCAG
  GTCGATCAGA TCGAGCAGAA CCTACCAGAG CAAGCAAGGC TGACCGGGGC AAGCAGAAGT
  TCTAAAAGTT CAGTTCCGGA CAACCACATA AAGGCTCACA ACCATCTGTA CAGCTACAGT
  GTACTCACAT ACATAAGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370864795	MGP_WTSI_7_29477429	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242530108					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370864795	MGP_WTSI_7_29477429	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28391835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	649 bp proximal
Fbxo27	F-box protein 27	439 bp upstream
Rr644337	regulatory region 644337	257 bp proximal
Rr644338	regulatory region 644338	1119 bp proximal
Rr644339	regulatory region 644339	1620 bp proximal
Tssr65494	transcription start site region 65494	406 bp upstream
Tssr65495	transcription start site region 65495	445 bp upstream
Tssr65496	transcription start site region 65496	593 bp upstream
Tssr65497	transcription start site region 65497	602 bp upstream
Tssr65498	transcription start site region 65498	622 bp upstream
Tssr65499	transcription start site region 65499	1587 bp upstream