rs242534955 SNP Detail

Summary

• ID
  rs242534955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127125368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGATGA AAGTCGCGAC
  TTGCCCTGCC CCGCCCCAAA GGCTTCCCGG GTAGTGTGCA GAGACTTGAC CCGCCTCTCC
  AGGTCAACAT GTCACAACAC GACCTCAGCC TGTCAAGTCA CATGACCTCT GCCTGTCACT
  GACAACCTGG TCTGTCTTTA GGCCAGGAGA GACCATCTGG TCCAACCCAC CCCCCACCTC
  Y
  ACTAACAGAA GGGGAAATGA AGGTCTGGAG CGAAGGAGCA GTCTGGCCAA GGACCTGTCA
  CCGTCGCACC ATCCAATAGC AACCGGTCTT GGTTCAGTTT CTACTTAAAC TCTGGCTTGC
  CCCTCTTGAG TCTACGACAG ACTATGTAAT AGGCCACCAC ATGGCCTCTG TTTTCATGGC
  ACAAAAAAAA AAAAATACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382182450	MGP_WTSI_10_126726555	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242534955					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382182450	MGP_WTSI_10_126726555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127125368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2349	CpG island 2349	within coordinates
Cpgi2350	CpG island 2350	826 bp proximal
Ddit3	DNA-damage inducible transcript 3	1294 bp upstream
Gm4189	predicted gene 4189	194 bp downstream
Gm20492	predicted gene 20492	within coordinates
Gm66222	predicted gene, 66222	510 bp upstream
Mbd6	methyl-CpG binding domain protein 6	481 bp upstream
Rr369092	regulatory region 369092	969 bp upstream
Rr402323	regulatory region 402323	112 bp downstream
Rr402324	regulatory region 402324	1833 bp upstream
Rr440863	regulatory region 440863	1004 bp distal
Rr440864	regulatory region 440864	620 bp distal
Rr440865	regulatory region 440865	333 bp distal
Rr440866	regulatory region 440866	20 bp proximal
Rr440867	regulatory region 440867	785 bp proximal
Rr440868	regulatory region 440868	1120 bp proximal
Rr440869	regulatory region 440869	1839 bp proximal
Tssr3392	transcription start site region 3392	548 bp downstream
Tssr96176	transcription start site region 96176	1414 bp downstream
Tssr96177	transcription start site region 96177	978 bp downstream
Tssr96178	transcription start site region 96178	948 bp downstream
Tssr96179	transcription start site region 96179	504 bp upstream
Tssr96180	transcription start site region 96180	1287 bp upstream
Tssr99755	transcription start site region 99755	1069 bp upstream
Tssr99756	transcription start site region 99756	1039 bp upstream
Tssr99757	transcription start site region 99757	866 bp upstream
Tssr99758	transcription start site region 99758	725 bp upstream
Tssr99759	transcription start site region 99759	653 bp upstream
Tssr99760	transcription start site region 99760	581 bp upstream
Tssr99761	transcription start site region 99761	502 bp upstream
Tssr99762	transcription start site region 99762	464 bp upstream
Tssr99763	transcription start site region 99763	432 bp upstream
Tssr99764	transcription start site region 99764	839 bp downstream