rs242536072 SNP Detail

Summary

• ID
  rs242536072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23117189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTCATAC TCAGGATAAA
  TGGAGGGATT TTTTTTGGGG GGGGGTTCGA GACAGGGTTT CTCTGTGTAG CCCTGGCTGT
  CCTGGAACTC ACTCTGTAGA CCAGGCTGGC CTCGAACTCA GAAATCCGCC TGCCTCTGCC
  TCCCGAGTGC TGGGATCAAA GGCGTGCACC ACCACCGCCA GGCAATGGAG GGATTGTAAA
  Y
  CCGCAGTGTT GACTGTATGC CCTGCTGTAG ATCCTTAGCT ATCATGATGG AAAACAACCC
  AGCACTCATC TCAGGAAGAA GCACACTGAG TTCATCAGAC TCCCAACCCC ACACTAATTG
  TTGACCAAGT AAAGCCACAA GATTCAGTTG TTAAGGCTCT CTGGATGATT CCAGTTCTCA
  GGACTATTTA ACACAGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402048948	MGP_WTSI_19_23214315	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242536072					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402048948	MGP_WTSI_19_23214315	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23117189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	829 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	318 bp upstream
Klf9	Kruppel-like transcription factor 9	1401 bp upstream
Rr405898	regulatory region 405898	775 bp upstream
Rr545290	regulatory region 545290	within coordinates
Rr545291	regulatory region 545291	329 bp proximal
Rr545292	regulatory region 545292	1279 bp proximal
Tssr155578	transcription start site region 155578	282 bp upstream
Tssr155579	transcription start site region 155579	997 bp upstream
Tssr155580	transcription start site region 155580	1115 bp upstream
Tssr155581	transcription start site region 155581	1131 bp upstream
Tssr155582	transcription start site region 155582	1154 bp upstream
Tssr155583	transcription start site region 155583	1194 bp upstream
Tssr155584	transcription start site region 155584	1239 bp upstream
Tssr155585	transcription start site region 155585	1301 bp upstream
Tssr155586	transcription start site region 155586	1358 bp upstream
Tssr155587	transcription start site region 155587	1817 bp upstream
Tssr155588	transcription start site region 155588	1851 bp upstream
Tssr158621	transcription start site region 158621	812 bp downstream
Tssr158622	transcription start site region 158622	1142 bp downstream