rs242536393 SNP Detail

Summary

• ID
  rs242536393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59526495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGACCTCAA CTGCTTACCC ATGTTCTGTC
  ACCTCCAGCC CGAGGCTGCA CCACCACTAG ATGAGGGGCT GTGGTTCCTA GGTTCAGATG
  TGGGCTGGCT GTACCCTTTT GTAGAGTCAG GCTGAGAGCC AGggccataa cgtagtgatc
  Y
  ccagcctgca tctggtcagc acatgtgctg aatctggcag acaatttcaa tttttttaaa
  aattgaattc atcgccaaca tttgaatatc actagtttcc ttgtagaaat acatttaaaa
  attttttaaa tttattgatt aattgattga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323698883	CHEV_11_59449171	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242536393					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59526495 () rs orientation: forward

Symbol	Name	Function Class
A630028G03Rik	RIKEN cDNA A630028G03 gene	within coordinates
Gm33998	predicted gene, 33998	110 bp downstream
Rr448219	regulatory region 448219	295 bp proximal
Rr448220	regulatory region 448220	789 bp proximal
Tssr101856	transcription start site region 101856	1473 bp downstream