rs242545167 SNP Detail

Summary

• ID
  rs242545167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172155112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCCTGC GATGAGGACT
  TCCACAGCCC TTTCCCTGGC AATTATCCCT TCCCCCAGCA CTCTTCAGCA TCCTGCCAGA
  AGCCCCACCT GAAGACTGTT CCCTCGGTGT TCTCCCTGGC CTCACTCTTT CTCCTGCTAC
  ATTTCCCCTC CACCCCAGAC TTCCCAAGGA GAAAGCAATG CAGACTGTGC ACAAAAACCT
  Y
  CAGTGTGCAA AGGTTGGATG TCCTCAGCAT TGGGAACTTC CCACTGGCAA TTCTAACTGC
  TTCACCGTGG TCACTGATGC TCTGATACCA GCCCATTTCC TGCCAGGGCT CTTTCCCACA
  GGAGACACGC TGAAAAGGGT TGGCAATAGG AGATTGGGGG CCATGCGTGA GGTCAACTGC
  CCACGGCAAG GATGACGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352403546	MGP_WTSI_1_174257676	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242545167					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352403546	MGP_WTSI_1_174257676	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172155112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	590 bp distal
Gm70847	predicted gene, 70847	619 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423527	regulatory region 423527	1255 bp distal
Rr423528	regulatory region 423528	1627 bp distal
Rr423529	regulatory region 423529	1212 bp distal
Rr423530	regulatory region 423530	685 bp distal
Rr423531	regulatory region 423531	673 bp proximal
Rr423532	regulatory region 423532	1727 bp proximal
Tssr15210	transcription start site region 15210	1320 bp upstream
Tssr15211	transcription start site region 15211	1307 bp upstream
Tssr15212	transcription start site region 15212	1290 bp upstream
Tssr15213	transcription start site region 15213	1716 bp downstream
Tssr15214	transcription start site region 15214	1772 bp downstream