rs242546544 SNP Detail

Summary

• ID
  rs242546544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67197230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGCTTTT TATGGTCTCT TCTGTACTGC
  TTTCTCATGT CTATGTGATA TGCATGTGTG TGTGCAAGTG CACATGCATG TGCATGTCTA
  CTGTGCAGGT ATGTGCACCC AAgtgtgcac atggggagcc ccaagcagga cacccagttt
  Y
  ttcctggatt gttcttcaca ttactgtctt atgacagggt cactcattga actggatagc
  tttggtttgg ctgtacggcc aataaataag ctctcaggaa gtgtctagct ccattcctta
  atgctgaggt tataagcaca tgcattcatt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319761946	CHEV_1_67204645	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242546544					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67197230 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Tssr7206	transcription start site region 7206	1846 bp downstream
Tssr7207	transcription start site region 7207	1168 bp downstream
Tssr7208	transcription start site region 7208	248 bp downstream
Tssr7209	transcription start site region 7209	1311 bp upstream
Tssr7210	transcription start site region 7210	1350 bp upstream
Tssr7211	transcription start site region 7211	1362 bp upstream