rs242549024 SNP Detail

Summary

• ID
  rs242549024
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38057505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGGAGG AACTAAATTT
  TCAGGGGGAA AAAAAAGCAG TATTGTTTTA AACCTCCAAT TGATAGAAAT ACACTTTATA
  GGAATCTAGG GATACTCAAT GTATTGCCTG TTGATAAACT TGATCCACTT GGGGTCAGTA
  ATGGCGTCTC CACCTTCAGT TGTCTGTGTA CTTTTCATTA TTGTTTAGGG CACCTGGATT
  K
  TGAAGTGTGT GGTGAGTGTG AGGCATATTC TTTTGTGTGG TTGGATTTGT TCCTATTTTT
  TTTCCTCTTT TGTTTTCTTT TAGATTTTTG CTTTGTGTAT GAGTGTTTTG CCTGCATATA
  GCTACATGTA CCATGTGTGT GCCTGGTGCT CACAGAGGTC AGACGAGAGG GCATTAGATC
  CTCTACAGCT GGAGTTACAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349287080	MGP_WTSI_1_38075269	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	T	G	G	G	G	G	G	T	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242549024					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	T	G	G	G	G	G	G	T	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349287080	MGP_WTSI_1_38075269	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38057505 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	1499 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Rr16031	regulatory region 16031	1696 bp proximal
Tssr6335	transcription start site region 6335	562 bp downstream
Tssr6336	transcription start site region 6336	547 bp downstream
Tssr6337	transcription start site region 6337	364 bp downstream
Tssr6338	transcription start site region 6338	340 bp downstream
Tssr6339	transcription start site region 6339	555 bp upstream
Tssr6340	transcription start site region 6340	603 bp upstream
Tssr6341	transcription start site region 6341	644 bp upstream
Tssr6342	transcription start site region 6342	674 bp upstream
Tssr6343	transcription start site region 6343	691 bp upstream
Tssr6344	transcription start site region 6344	725 bp upstream
Tssr6345	transcription start site region 6345	744 bp upstream
Tssr6346	transcription start site region 6346	807 bp upstream
Tssr6347	transcription start site region 6347	837 bp upstream
Tssr6348	transcription start site region 6348	985 bp upstream
Tssr6349	transcription start site region 6349	1024 bp upstream