rs242549829 SNP Detail

Summary

• ID
  rs242549829
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180434321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATGTAAG ATCCAGCAGT
  ATCAACAAAG TAAGATGCCC CTGCCTGTCT GTGCGCTTGC ATGGGCTGAG CACTAAGACA
  TTGTTTGTGA GCCTGCTTCT CCACTGGGCT AGGGATGCAG CCCTCTGAAC TGGGGAACAG
  CAGCCTGGGG CTCCTGGCAC TTGCAGTGCC CAAACACTAG GCAGCCCAAG TTTGATGGAA
  M
  AAAGTCAGAG GTCATGGATT CTCTGGGCAC CTTGAGGAGT AAGAACTGTC ACTCCCCTGC
  AGCTTAGGTC TCAGTAACTA AGAGAGGCTG TCACTGCTGA GAGGTGCCAT TGCTCAGCTC
  ATCTTTCTCC TGATGGCTTC CTTTCAGACC CTGGACACCA TTACCTTTAG AACATCTTTG
  TGGATTGCTT CTTCAGGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320632361	CHEV_2_180527233	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242549829					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180434321 () rs orientation: forward

Symbol	Name	Function Class
D2Mit463	DNA Segment, Chr 2, Massachusetts Institute of Technology-463	1926 bp proximal
Gm75401	predicted gene, 75401	within coordinates
Rr572849	regulatory region 572849	519 bp distal
Rr572850	regulatory region 572850	615 bp distal