rs242552951 SNP Detail

Summary

• ID
  rs242552951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:24559476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAATAGA GTCACTGTAG
  GCTTGGGAGA TAGTTCATTT GATAAAATGC TTGCCTTCCA TCTCCAGCTC CTGAATTCAA
  TGCCCAGACA CCACGTAAGA GAAGCTGTCC TTGCTCAAAG TTCCAGCTCT GGTGAAGTAG
  AGACAAGCAG ATCTCTAGGG TTTTCTGGGC AGCGAGCCTT GCATATTTCA CAAGTTCCAG
  R
  ACAGTGAGAA GCCCTGTGTT ACAATAAAAC AATGACATCT GAGGAATGGC ACTCAGGGTT
  GTCCTGTGGT CACTACATAC TTTTAACCCT CCCAGGGCGA ATGCACTAAG AATCTATGAT
  GGGGATGGGG GAGGTGGAGG TACAGGCTAT GACATGTTTC TTACCATAAC CCTAACCATT
  TGAACTTAAC AGTTATCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324295908	CHEV_13_24467362	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242552951					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24559476 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	Intron
Gm11342	predicted gene 11342	within coordinates
Rr476038	regulatory region 476038	432 bp distal
Rr476039	regulatory region 476039	within coordinates
Rr476040	regulatory region 476040	447 bp proximal
Tssr4016	transcription start site region 4016	557 bp upstream
Tssr118891	transcription start site region 118891	1976 bp downstream
Tssr118892	transcription start site region 118892	541 bp upstream
Tssr118893	transcription start site region 118893	577 bp upstream
Tssr118894	transcription start site region 118894	641 bp upstream
Tssr118895	transcription start site region 118895	675 bp upstream
Tssr121784	transcription start site region 121784	449 bp downstream
Tssr121785	transcription start site region 121785	469 bp downstream
Tssr121786	transcription start site region 121786	529 bp downstream