rs242564219 SNP Detail

Summary

• ID
  rs242564219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36727489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gctcgtgca ctggtcccgc agctcagctg
  ctagttcact gcgtggctgg tgatctgttt tggctgcctc tgtttctagc tatcacattt
  gtactagaga caccggggaa cggggaagtc acttgctcct attctcaccc agaagggaat
  R
  tctttgctag cacgtctcct ggttaaaatt tggcccctat acccatcaaa gaataactct
  aaatggccgt ttactggaac tttaatagca aacttttaca actctctagc tagcgatctg
  tagaccattc cctaccccac gttttcttgc                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324923469	CHEV_15_36657000	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242564219					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36727489 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	within coordinates
Cpgi7034	CpG island 7034	91 bp proximal
Gm41297	predicted gene, 41297	within coordinates
Tssr131078	transcription start site region 131078	1968 bp downstream
Tssr131079	transcription start site region 131079	920 bp downstream
Tssr131080	transcription start site region 131080	866 bp downstream
Tssr131081	transcription start site region 131081	844 bp downstream
Tssr131082	transcription start site region 131082	549 bp downstream
Tssr131083	transcription start site region 131083	373 bp downstream
Tssr131084	transcription start site region 131084	304 bp downstream