rs242573446 SNP Detail

Summary

• ID
  rs242573446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:31402017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCTCGAAG GCAATGGAAA GGATAGGCTT
  GAACCTTTCT TCACCAACAT CCTGTTCTGA AAACTGCGCT AACAAAAAGT ATAGAAAACA
  AGCTCCCTTC TATTTTTGTA TTTTGAAAGC ACGCCTCCCT TGTAGAAGAA ACTAGAAGGG
  Y
  TGGGATGGTG GGTGAGGTGT TAGGTTTTCA TTGAGAGTGC ACCTAAAAGA TTGCTAACTG
  TTGTCTATAA GATTGAGCAC AGagcctggc gtggtgggct acgcctttaa tcccagcact
  cgggaggcag aggcaggcag atttctcagt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323992857	CHEV_12_32036883	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242573446					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:31402017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4532	CpG island 4532	421 bp distal
Dld	dihydrolipoamide dehydrogenase	547 bp upstream
Rr265302	regulatory region 265302	within coordinates
Rr403256	regulatory region 403256	330 bp downstream
Tssr116040	transcription start site region 116040	597 bp upstream
Tssr116041	transcription start site region 116041	574 bp upstream