rs242574200 SNP Detail

Summary

• ID
  rs242574200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110229513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTAAGTT GCGCAATATA
  CTCCCAATTT TATAGGGTTG CTCACTGGAC CTGAGCTAAG GCGCTCTTTG GAGACTTAAA
  CTGATATCCA AGGCTTTCTA AGTAGAGTTT ATGCTCCAAC TGTGGGTGTT AAAAGCTACC
  GGGGGTGGGG GACCCGCAAA ACGTTCGCAC AGCAGCTCTG GGAAACCCTC AGCTAGCAGC
  Y
  CAAGTCTTCA CTGGGCCCTG ACGTCCATAA GCGGGGCTGT AGCGCCCCCT GCTGGCCACC
  ATGCGTGCTC CCCCAAAGAG CGGTAGAGTA GTACGTGCGG TTTAATAAGT TCTTCTACGT
  GGGAGTCAGC ACATAGTCTT AATGAAAGAG GAAAGAAAGG GGGGGAAAAA GCAGTTTGCA
  GATGCCAACT GGGCTCCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372709562	MGP_WTSI_7_117773820	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242574200					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372709562	MGP_WTSI_7_117773820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110229513 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	486 bp downstream
Cpgi19577	CpG island 19577	1034 bp distal
Cpgi19578	CpG island 19578	within coordinates
Gm28863	predicted gene 28863	within coordinates
Gm72687	predicted gene, 72687	84 bp upstream
Rr400547	regulatory region 400547	within coordinates
Rr653271	regulatory region 653271	95 bp distal
Rr653272	regulatory region 653272	within coordinates
Rr653273	regulatory region 653273	39 bp proximal
Rr653274	regulatory region 653274	1407 bp proximal
Tssr68501	transcription start site region 68501	1761 bp downstream
Tssr68502	transcription start site region 68502	775 bp downstream