rs242575589 SNP Detail

Summary

• ID
  rs242575589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69870457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAAAGATG ATGACATCAA CTTTAGAAGA
  AACTCAAGTG TTTCTTGGTT GACTATGCAT TAACGTGCAA ACATTAAAGC CAGAATGCTT
  ATGTATATAC AGCAAACTAT CTAAGCGTTT ACTGCTCTCT TTTGTTGAGT GAGCAACAGC
  Y
  TCATTCATGT CCCTTCAGTC AAGCCGGCAA GCTGGTGCTA AAGTCTCTAA AAAAAACCCA
  TCTCGCTAGT CTTTTAATTT TTACTGTTCC AAACCCTACG ATACCAGTTT CTCCACAGTA
  TGAGATTCTG TGCTGTCTGT TGAAGAGACG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323732454	CHEV_11_69793133	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242575589					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69870457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3163	CpG island 3163	448 bp proximal
Ctdnep1	CTD nuclear envelope phosphatase 1	1537 bp upstream
Elp5	elongator acetyltransferase complex subunit 5	within coordinates
Gm56228	predicted gene, 56228	1061 bp upstream
Rr369263	regulatory region 369263	272 bp upstream
Rr402684	regulatory region 402684	885 bp upstream
Rr450182	regulatory region 450182	641 bp proximal
Rr450183	regulatory region 450183	1035 bp proximal
Rr450184	regulatory region 450184	1611 bp proximal
Tssr102587	transcription start site region 102587	1120 bp upstream
Tssr102588	transcription start site region 102588	1137 bp upstream
Tssr102589	transcription start site region 102589	1149 bp upstream
Tssr102590	transcription start site region 102590	1199 bp upstream
Tssr102591	transcription start site region 102591	1408 bp upstream
Tssr102592	transcription start site region 102592	1496 bp upstream
Tssr102593	transcription start site region 102593	1624 bp upstream
Tssr102594	transcription start site region 102594	1701 bp upstream
Tssr102595	transcription start site region 102595	1750 bp upstream
Tssr102596	transcription start site region 102596	1829 bp upstream
Tssr102597	transcription start site region 102597	1844 bp upstream
Tssr102598	transcription start site region 102598	1860 bp upstream
Tssr102599	transcription start site region 102599	1891 bp upstream
Tssr108900	transcription start site region 108900	587 bp downstream
Tssr108901	transcription start site region 108901	602 bp downstream
Tssr108902	transcription start site region 108902	643 bp downstream
Tssr108903	transcription start site region 108903	837 bp downstream
Tssr108904	transcription start site region 108904	1597 bp downstream
Tssr108905	transcription start site region 108905	1611 bp downstream
Tssr108906	transcription start site region 108906	1650 bp downstream